本地化galaxy

安装的原因

https://galaxyproject.github.io/training-material/topics/epigenetics/tutorials/methylation-seq/tutorial.html

安装最新的版本，第一次 sh run.sh出错。运行第二次，可以了。

centos7 本地化galaxy 要关闭防火墙

https://www.cnblogs.com/moxiaoan/p/5683743.html

服务器上localhost:8080，还是10.164.10.186:8080都能访问。我一开始想的是web服务器的问题。

移除http服务，在自己电脑上访问不了Jbrowse(10.174.10.186)，服务器上能正常访问。所以想到了可能是防火墙的问题

# 调试 kill
ps -ef |grep uwsgi
kill <第二列>

https://docs.galaxyproject.org/en/master/admin/framework_dependencies.html#conda

Conda and virtualenv are incompatible, unless an adapted virtualenv_ from the conda-forge_ channel is used. Galaxy can create a virtualenv using the adapted virtualenv package. Once a valid .venvenvironment exists it will be used.

https://galaxyproject.github.io/training-material/topics/introduction/slides/introduction.html#2

https://galaxyproject.org/admin/get-galaxy/

https://github.com/galaxyproject/galaxy

https://docs.galaxyproject.org/en/release_19.01/admin/config.html

https://www.jianshu.com/p/a1f297eb4859

---

ps -ef | grep uwsgi
nohup sh run.sh &> run.log 
## 不是永久的
# systemctl stop firewalld 
firewall-cmd --zone=public --add-port=8080/tcp --permanent 
firewall-cmd --reload

即使我把程序放到后台，但只要我关掉终端，网页就打不开

nohup sh ~/software/galaxy/run.sh &> run.log &

下次用的时候

sh ~/software/galaxy/run.sh

用法类似于 jypyter notebook

2019-3-27 23:50:53：exit退出终端没有问题